Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020460.1 Corchorus olitorius cultivar O-4 contig20493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8430
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:4971 original size:21 final size:22

Alignment explanation


    Indices: 4947--4988  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       4937 GTGACACTGC

                *     *           
       4947 CCACCTGGGTTCTCAA-GCAAA
          1 CCACATGGGTGCTCAACGCAAA

                                 
       4968 CCACATGGGTGCTCAACGCAA
          1 CCACATGGGTGCTCAACGCAA

       4989 CCATGTGGGC


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21   14  0.78
  22    4  0.22

ACGTcount: A:0.29, C:0.33, G:0.21, T:0.17


Consensus pattern (22 bp):   
CCACATGGGTGCTCAACGCAAA

Found at i:7017 original size:11 final size:11

Alignment explanation


    Indices: 7001--7033  Score: 66
    Period size: 11  Copynumber: 3.0  Consensus size: 11

       6991 GAAGAACACG

                       
       7001 TGTACAATGTT
          1 TGTACAATGTT

                       
       7012 TGTACAATGTT
          1 TGTACAATGTT

                       
       7023 TGTACAATGTT
          1 TGTACAATGTT

       7034 ATTGCTGAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   22  1.00

ACGTcount: A:0.27, C:0.09, G:0.18, T:0.45


Consensus pattern (11 bp):   
TGTACAATGTT
Done.