Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020461.1 Corchorus olitorius cultivar O-4 contig20494, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5188
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:2101 original size:13 final size:13

Alignment explanation


    Indices: 2083--2108  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2073 AAGGTAACAA

                         
       2083 CAAAAATCATCAC
          1 CAAAAATCATCAC

                         
       2096 CAAAAATCATCAC
          1 CAAAAATCATCAC

       2109 TCATGCCAAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15


Consensus pattern (13 bp):   
CAAAAATCATCAC

Found at i:3671 original size:22 final size:22

Alignment explanation


    Indices: 3622--3672  Score: 59
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       3612 AAATATTACC

                         *   **   
       3622 ATAATTATTTTTGGCAGCCATA
          1 ATAATTATTTTTGCCAGAAATA

                                   
       3644 ATAATTATTTTTGCCAAGAAATA
          1 ATAATTATTTTTGCC-AGAAATA

                   
       3667 A-AATTA
          1 ATAATTA

       3673 GGCAATAATT


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  22   19  0.76
  23    6  0.24

ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39


Consensus pattern (22 bp):   
ATAATTATTTTTGCCAGAAATA
Done.