Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020462.1 Corchorus olitorius cultivar O-4 contig20495, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5565
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33


Found at i:426 original size:13 final size:13

Alignment explanation


    Indices: 408--433  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        398 AAGGTAACAA

                         
        408 CAAAAATCATCAC
          1 CAAAAATCATCAC

                         
        421 CAAAAATCATCAC
          1 CAAAAATCATCAC

        434 TCATGCCAAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15


Consensus pattern (13 bp):   
CAAAAATCATCAC

Found at i:1993 original size:22 final size:22

Alignment explanation


    Indices: 1944--1994  Score: 59
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       1934 AAATATTACC

                         *   **   
       1944 ATAATTATTTTTGGCAGCCATA
          1 ATAATTATTTTTGCCAGAAATA

                                   
       1966 ATAATTATTTTTGCCAAGAAATA
          1 ATAATTATTTTTGCC-AGAAATA

                   
       1989 A-AATTA
          1 ATAATTA

       1995 GGCAATAATT


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  22   19  0.76
  23    6  0.24

ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39


Consensus pattern (22 bp):   
ATAATTATTTTTGCCAGAAATA
Done.