Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020463.1 Corchorus olitorius cultivar O-4 contig20496, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17541
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33


Found at i:15384 original size:2 final size:2

Alignment explanation


    Indices: 15377--15412  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

      15367 CATCATCATC

                                                                 
      15377 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

      15413 GTACTAAAGT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.