Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020468.1 Corchorus olitorius cultivar O-4 contig20501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29392

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34--106
30
2.4
30
90
4
112
32
38
12
16
1.86
169--210
15
2.7
15
92
3
66
64
14
9
11
1.50
10779--10824
23
1.9
23
82
8
56
39
13
8
39
1.75
10827--10871
24
1.9
24
90
4
74
75
11
4
8
1.17
11028--11057
15
1.9
16
93
6
53
70
6
10
13
1.34
12446--12493
11
4.8
10
82
17
55
39
20
2
37
1.65
12446--12483
19
2.1
18
90
5
58
39
21
0
39
1.53
16179--16204
2
13.0
2
100
0
52
50
0
0
50
1.00
25904--25934
14
2.2
14
100
0
62
22
35
22
19
1.96
26618--26684
26
2.5
27
90
2
100
32
8
17
40
1.81
26672--26698
7
3.9
7
100
0
54
14
11
14
59
1.62
26714--26783
7
10.0
7
93
0
113
17
0
24
58
1.38
26714--26791
21
3.7
21
89
0
111
19
0
24
56
1.42
27038--27475
54
8.1
54
83
8
182
35
21
14
28
1.93
27110--27476
54
6.8
54
87
4
501
37
20
13
27
1.91
27110--27476
161
2.3
162
87
4
537
37
20
13
27
1.91
27584--28078
37
13.4
37
78
5
446
44
16
16
23
1.86
27583--28106
74
7.1
74
82
4
608
43
15
16
23
1.87
27584--28106
111
4.7
110
80
5
552
43
15
16
23
1.87
29149--29215
29
2.3
30
79
7
84
4
19
1
74
1.07

Tables:   1

The End!