Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020470.1 Corchorus olitorius cultivar O-4 contig20503, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49710

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8080--8118
20
1.9
21
84
5
53
61
10
2
25
1.41
9627--9661
12
2.9
12
100
0
70
51
8
14
25
1.70
19716--19759
21
2.0
22
91
4
72
43
9
22
25
1.82
21704--21743
16
2.5
16
83
0
53
37
35
17
10
1.83
21733--21790
17
3.5
17
85
2
73
22
50
24
3
1.65
21986--22010
9
2.8
9
100
0
50
48
8
0
44
1.32
22561--22607
13
3.8
12
78
13
51
40
0
4
55
1.19
22826--22869
6
6.8
6
80
14
52
31
45
18
4
1.69
22764--22865
16
6.7
15
71
14
59
35
40
15
8
1.79
22823--22865
15
3.1
14
78
15
54
37
39
16
6
1.75
43945--44122
32
5.5
32
90
2
259
25
16
25
32
1.97
45646--45680
17
2.1
17
94
0
61
54
17
8
20
1.68
46303--46328
13
2.0
13
100
0
52
76
0
0
23
0.78
46495--46569
27
2.8
27
100
0
150
20
20
42
17
1.89

Tables:   1

The End!