Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020478.1 Corchorus olitorius cultivar O-4 contig20511, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3701
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32


Found at i:613 original size:22 final size:22

Alignment explanation


    Indices: 566--611  Score: 76
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        556 CTCGGTGGCA

                                  
        566 CCCGGACATGACTAGGCCATAG
          1 CCCGGACATGACTAGGCCATAG

                 *                
        588 CCCGGTCATGACTAGGCCAT-G
          1 CCCGGACATGACTAGGCCATAG

               
        609 CCC
          1 CCC

        612 CGCGCCAGGC


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  21    4  0.17
  22   19  0.83

ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15


Consensus pattern (22 bp):   
CCCGGACATGACTAGGCCATAG
Done.