Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002049.1 Corchorus olitorius cultivar O-4 contig02049, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3130
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33


Found at i:1469 original size:45 final size:45

Alignment explanation


    Indices: 1414--1528  Score: 196
    Period size: 45  Copynumber: 2.6  Consensus size: 45

       1404 AGTGCATTAC

                         *                               
       1414 CTAA-ATTCTACTGATCCATCTCTAGGTAATTCATCAAAATAAAG
          1 CTAATATTCTACTAATCCATCTCTAGGTAATTCATCAAAATAAAG

                                                         
       1458 CTAATATTCTACTAATCCATCTCTAGGTAATTCATCAAAATAAAG
          1 CTAATATTCTACTAATCCATCTCTAGGTAATTCATCAAAATAAAG

                         **           
       1503 CTAATATTCTACTCCTCCATCTCTAG
          1 CTAATATTCTACTAATCCATCTCTAG

       1529 ATATAAATTA


Statistics
Matches: 67,  Mismatches: 3, Indels: 1
        0.94            0.04        0.01

Matches are distributed among these distances:
  44    4  0.06
  45   63  0.94

ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34


Consensus pattern (45 bp):   
CTAATATTCTACTAATCCATCTCTAGGTAATTCATCAAAATAAAG
Done.