Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020494.1 Corchorus olitorius cultivar O-4 contig20527, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4331
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28


Found at i:3422 original size:30 final size:30

Alignment explanation


    Indices: 3368--3427  Score: 77
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       3358 GAAGTTCGTG

                      *              *    
       3368 TTTGAAGACTTATTGAAGACAATTTGAAGA
          1 TTTGAAGACTCATTGAAGACAATTTCAAGA

                                *          
       3398 TTTGAAGA-TCATTGAAGAATAATTTCAAGA
          1 TTTGAAGACTCATTGAAG-ACAATTTCAAGA

       3428 GCAAGAATTG


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  29    8  0.31
  30   18  0.69

ACGTcount: A:0.42, C:0.07, G:0.18, T:0.33


Consensus pattern (30 bp):   
TTTGAAGACTCATTGAAGACAATTTCAAGA
Done.