Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020497.1 Corchorus olitorius cultivar O-4 contig20530, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1857
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26


Found at i:784 original size:34 final size:34

Alignment explanation


    Indices: 741--815  Score: 150
    Period size: 34  Copynumber: 2.2  Consensus size: 34

        731 TTACAAAGAA

                                              
        741 GGAGAGCTAGTTCCTCAAAGACTGCAGAATGGAT
          1 GGAGAGCTAGTTCCTCAAAGACTGCAGAATGGAT

                                              
        775 GGAGAGCTAGTTCCTCAAAGACTGCAGAATGGAT
          1 GGAGAGCTAGTTCCTCAAAGACTGCAGAATGGAT

                   
        809 GGAGAGC
          1 GGAGAGC

        816 ATGCATCGAC


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   41  1.00

ACGTcount: A:0.32, C:0.17, G:0.32, T:0.19


Consensus pattern (34 bp):   
GGAGAGCTAGTTCCTCAAAGACTGCAGAATGGAT
Done.