Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020501.1 Corchorus olitorius cultivar O-4 contig20534, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20998

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1529--1564
16
2.2
16
100
0
72
33
0
30
36
1.58
2051--2123
31
2.5
30
76
14
80
45
12
12
30
1.78
3664--3739
31
2.6
29
78
4
80
27
14
15
42
1.86
7109--7141
1
33.0
1
100
0
66
0
0
0
100
0.00
17709--17751
22
2.0
22
90
0
68
25
34
20
18
1.96
18780--18843
21
3.1
21
93
2
112
28
26
14
31
1.95
19807--19850
22
2.0
22
86
0
61
27
22
25
25
2.00
19804--19904
52
1.9
52
97
0
193
23
24
25
25
2.00
19934--19987
21
2.6
21
90
0
90
29
24
25
20
1.99
20480--20521
15
2.7
15
96
3
75
66
14
7
11
1.43

Tables:   1

The End!