Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020511.1 Corchorus olitorius cultivar O-4 contig20544, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21944

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
603--675
27
2.6
28
82
6
96
46
23
12
17
1.82
1352--1481
65
2.0
65
93
0
224
21
30
26
21
1.98
1624--1667
21
2.1
21
86
0
61
27
20
18
34
1.96
3542--3646
33
3.2
33
82
2
122
45
20
7
25
1.78
5857--5895
20
2.0
20
85
10
53
41
30
10
17
1.83
6114--6177
21
3.1
21
93
2
112
28
26
14
31
1.95
6903--7032
65
2.0
65
90
3
208
22
30
24
22
1.99
11385--11676
67
4.4
66
89
4
423
22
18
14
44
1.86
12880--19940
154
45.4
153
79
9
6132
41
18
18
21
1.90
12880--17281
307
14.5
308
86
3
5857
41
18
18
22
1.91
17328--19940
307
8.5
308
89
2
3773
41
19
17
21
1.90
21243--21490
4
63.0
4
65
16
90
27
8
0
63
1.26
21243--21383
27
5.0
26
68
21
79
26
8
0
64
1.22
21299--21396
25
4.1
25
75
22
102
29
8
0
62
1.24
21250--21493
44
5.5
44
90
2
339
27
8
0
63
1.27
21392--21491
27
4.0
26
70
21
88
28
8
1
63
1.29
21264--21475
19
11.3
19
70
20
110
27
8
0
62
1.28

Tables:   1

The End!