Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020514.1 Corchorus olitorius cultivar O-4 contig20547, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1357
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:825 original size:4 final size:4

Alignment explanation


    Indices: 818--843  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

        808 TTTCATTCAC

                                            
        818 TTAT TTAT TTAT TTAT TTAT TTAT TT
          1 TTAT TTAT TTAT TTAT TTAT TTAT TT

        844 TCCTTTGGTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77


Consensus pattern (4 bp):   
TTAT

Done.