Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020515.1 Corchorus olitorius cultivar O-4 contig20548, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1096
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27


Found at i:505 original size:51 final size:51

Alignment explanation


    Indices: 434--540  Score: 137
    Period size: 51  Copynumber: 2.1  Consensus size: 51

        424 TATTTCTGAA

                         *         **                           
        434 AGAAAAACACGAATACAGTGTTTTTATGTCCGGAGACAAGAT-TGAAACAAG
          1 AGAAAAACACGAAAACAGTGTTTGAATGTCCGGAGACAAGATCT-AAACAAG

                      *    *               *                   
        485 AGAAAAACACTAAAAGAGTGTTTGAATGTCCTGAGACAAGATCTAAACAAG
          1 AGAAAAACACGAAAACAGTGTTTGAATGTCCGGAGACAAGATCTAAACAAG

                  
        536 A-AAAA
          1 AGAAAA

        541 TATGAAGAAC


Statistics
Matches: 49,  Mismatches: 6, Indels: 3
        0.84            0.10        0.05

Matches are distributed among these distances:
  50    4  0.08
  51   44  0.90
  52    1  0.02

ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20


Consensus pattern (51 bp):   
AGAAAAACACGAAAACAGTGTTTGAATGTCCGGAGACAAGATCTAAACAAG
Done.