Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020516.1 Corchorus olitorius cultivar O-4 contig20549, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17808

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
958--1027
36
1.9
36
100
0
140
42
5
21
30
1.76
2060--2117
7
8.6
7
86
7
75
62
0
15
22
1.33
2055--2117
19
3.2
19
84
4
72
65
0
14
20
1.27
3340--3748
145
2.9
142
85
4
565
30
19
16
33
1.94
3925--3964
15
2.6
16
88
4
55
62
12
10
15
1.54
11083--11145
28
2.2
28
82
0
72
30
12
9
47
1.73
11479--11518
15
2.6
16
92
4
64
65
12
7
15
1.47
12275--12301
12
2.2
12
100
0
54
70
7
14
7
1.32
13164--13532
146
2.5
143
85
7
467
30
20
15
33
1.94
13611--13945
40
8.5
40
80
5
335
30
20
11
38
1.88
13611--13954
119
2.9
119
80
6
380
29
19
11
38
1.87
13640--13946
79
3.9
79
82
3
341
30
19
11
38
1.87
16441--16491
13
3.9
13
74
7
50
82
1
11
3
0.89

Tables:   1

The End!