Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020517.1 Corchorus olitorius cultivar O-4 contig20550, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7947

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1690--1758
28
2.5
28
90
0
111
39
11
18
30
1.87
1889--1964
26
2.9
27
94
4
136
36
22
19
21
1.95
2205--2480
50
5.5
50
89
5
396
27
25
11
36
1.90
2205--2480
101
2.7
101
91
4
425
27
25
11
36
1.90
2496--2601
48
2.2
48
100
0
212
32
12
31
24
1.92
2587--2724
50
2.8
50
94
0
231
28
13
27
29
1.94
2539--2724
100
1.9
100
81
10
231
29
13
28
28
1.94
3327--3525
50
4.0
50
90
1
274
36
14
15
34
1.88
4133--4171
10
3.8
10
87
12
53
10
0
0
89
0.48
4120--4168
16
2.9
17
87
6
64
10
2
2
85
0.76
4108--4169
6
10.8
6
81
13
51
11
1
4
82
0.89
4136--4186
23
2.2
23
82
6
59
13
0
5
80
0.89
4564--4627
24
2.7
22
79
18
67
14
14
1
70
1.25
4574--4626
16
3.2
16
76
10
61
15
11
1
71
1.22
7226--7258
16
2.1
16
88
11
50
63
3
9
24
1.38

Tables:   1

The End!