Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020519.1 Corchorus olitorius cultivar O-4 contig20552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31315

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1753--1801
20
2.4
21
89
3
73
28
8
24
38
1.84
2185--2234
21
2.4
21
83
6
66
44
22
6
28
1.76
3414--3539
45
2.8
45
95
2
218
33
6
22
38
1.79
3836--3865
2
15.0
2
100
0
60
50
0
0
50
1.00
8985--9015
15
2.1
15
93
0
53
54
3
6
35
1.42
10463--10513
22
2.2
24
80
16
63
41
1
0
56
1.10
14895--14947
16
3.3
16
79
10
54
33
32
20
13
1.91
15190--15231
7
6.3
7
89
10
70
30
14
26
28
1.95
15191--15229
13
3.0
13
100
0
78
30
15
23
30
1.95
15190--15231
20
2.1
20
91
8
68
30
14
26
28
1.95
18460--18775
128
2.6
119
81
9
345
38
19
18
23
1.93
22536--22924
60
6.4
60
91
1
481
32
18
17
31
1.94
22601--22924
30
10.7
30
92
0
477
31
19
17
30
1.95
24713--24760
14
3.5
14
82
5
71
50
14
0
35
1.44
24707--24760
27
2.0
27
100
0
108
48
14
0
37
1.45
24707--24749
13
3.2
13
80
6
59
46
16
0
37
1.47
26150--26299
28
5.4
28
86
1
185
16
16
25
42
1.88
28055--28156
53
1.9
53
89
0
159
42
20
14
22
1.89
29583--29622
15
2.6
16
88
4
55
62
12
10
15
1.54

Tables:   1

The End!