Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020522.1 Corchorus olitorius cultivar O-4 contig20555, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3716
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:3186 original size:30 final size:30

Alignment explanation


    Indices: 3141--3214  Score: 139
    Period size: 30  Copynumber: 2.4  Consensus size: 30

       3131 GTTTATTTTT

                                           
       3141 CCTTCCCCTGGCAAATACCAGAAAAAGTTAC
          1 CCTTCCCC-GGCAAATACCAGAAAAAGTTAC

                                          
       3172 CCTTCCCCGGCAAATACCAGAAAAAGTTAC
          1 CCTTCCCCGGCAAATACCAGAAAAAGTTAC

                         
       3202 CCTTCCCCGGCAA
          1 CCTTCCCCGGCAA

       3215 CGGCGCCAAA


Statistics
Matches: 43,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  30   35  0.81
  31    8  0.19

ACGTcount: A:0.32, C:0.36, G:0.14, T:0.18


Consensus pattern (30 bp):   
CCTTCCCCGGCAAATACCAGAAAAAGTTAC
Done.