Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020527.1 Corchorus olitorius cultivar O-4 contig20560, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3308
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.38


Found at i:1061 original size:58 final size:58

Alignment explanation


    Indices: 958--1070  Score: 149
    Period size: 58  Copynumber: 1.9  Consensus size: 58

        948 AGCATCATGC

                    *                                                 
        958 CTCGGTCCTAAAACGTCTCTTTTAGACATCTAATAAGAAAACATGTCACTCGATAAGA
          1 CTCGGTCCGAAAACGTCTCTTTTAGACATCTAATAAGAAAACATGTCACTCGATAAGA

                               *                    * *         *    
       1016 CTCGGTCCGAAAACGTCTTTTTTTATG-CATCTAATAA-AGACCATGTCACTTGATA
          1 CTCGGTCCGAAAACGTC-TCTTTTA-GACATCTAATAAGAAAACATGTCACTCGATA

       1071 TTTGATTAAT


Statistics
Matches: 48,  Mismatches: 5, Indels: 4
        0.84            0.09        0.07

Matches are distributed among these distances:
  58   31  0.65
  59   16  0.33
  60    1  0.02

ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31


Consensus pattern (58 bp):   
CTCGGTCCGAAAACGTCTCTTTTAGACATCTAATAAGAAAACATGTCACTCGATAAGA
Done.