Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020531.1 Corchorus olitorius cultivar O-4 contig20564, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2395
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31


Found at i:1699 original size:21 final size:21

Alignment explanation


    Indices: 1673--1714  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1663 GCATCTTAGG

                                 
       1673 CAACTCCGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

                  *              
       1694 CAACTCTGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

       1715 TTTTTCCTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21


Consensus pattern (21 bp):   
CAACTCCGATGAGCTTGAAAC
Done.