Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020544.1 Corchorus olitorius cultivar O-4 contig20577, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1638
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:1038 original size:18 final size:17

Alignment explanation


    Indices: 995--1049  Score: 60
    Period size: 16  Copynumber: 3.2  Consensus size: 17

        985 GATCTTGATT

                  *          
        995 TTTCAGGGCTTTTCTGC
          1 TTTCAGAGCTTTTCTGC

                             
       1012 -TTCAGAGCTTTTCTGC
          1 TTTCAGAGCTTTTCTGC

                *              
       1028 TTTGTAGAGCTTCTT-TGC
          1 TTT-CAGAGCTT-TTCTGC

                
       1046 TTTC
          1 TTTC

       1050 TTCAATTGTC


Statistics
Matches: 32,  Mismatches: 3, Indels: 6
        0.78            0.07        0.15

Matches are distributed among these distances:
  16   15  0.47
  17    2  0.06
  18   13  0.41
  19    2  0.06

ACGTcount: A:0.09, C:0.22, G:0.20, T:0.49


Consensus pattern (17 bp):   
TTTCAGAGCTTTTCTGC
Done.