Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020554.1 Corchorus olitorius cultivar O-4 contig20587, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3420
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.38


Found at i:694 original size:18 final size:18

Alignment explanation


    Indices: 671--708  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        661 AAAAAGGGTA

                      *       
        671 ATAAAAAAAATTGTTTTC
          1 ATAAAAAAAAGTGTTTTC

                   *          
        689 ATAAAAAGAAGTGTTTTC
          1 ATAAAAAAAAGTGTTTTC

              
        707 AT
          1 AT

        709 GATAGAGGAG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37


Consensus pattern (18 bp):   
ATAAAAAAAAGTGTTTTC
Done.