Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020556.1 Corchorus olitorius cultivar O-4 contig20589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23753

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3921--4022
51
2.0
52
81
12
122
23
22
12
41
1.88
8010--8089
30
2.7
32
81
16
100
27
17
12
42
1.85
9050--9133
22
4.0
21
71
14
75
46
3
0
50
1.19
9072--9125
10
5.0
10
75
16
54
50
0
0
50
1.00
10750--10785
17
2.1
17
89
0
54
30
11
19
38
1.86
13340--13399
18
3.3
18
83
0
75
20
26
23
30
1.98
13340--13408
18
3.8
18
82
0
66
18
28
24
27
1.98
19991--20048
29
2.0
29
90
3
91
48
8
10
32
1.68
20214--20369
54
2.9
55
80
7
192
47
5
17
29
1.69
21148--21422
50
5.5
50
89
1
354
37
14
17
30
1.90
22827--23341
40
13.0
40
90
2
761
30
19
29
20
1.97

Tables:   1

The End!