Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020557.1 Corchorus olitorius cultivar O-4 contig20590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21837

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2721--2770
25
2.0
25
96
0
91
38
14
20
28
1.91
3319--3445
65
1.9
66
93
1
220
27
10
31
30
1.90
3384--3553
50
3.4
50
97
0
315
27
11
28
31
1.92
4912--4955
7
6.4
7
89
10
56
6
15
0
77
0.97
4923--4956
15
2.4
14
95
5
59
8
11
0
79
0.94
5246--5295
15
3.4
15
73
10
50
12
2
8
78
1.05
5570--5612
13
3.2
13
81
15
52
32
13
4
48
1.63
5676--5711
8
4.6
8
93
6
65
13
11
0
75
1.06
9405--9704
40
7.6
40
87
1
399
32
17
29
22
1.96
13519--13568
25
2.0
25
96
0
91
38
14
20
28
1.91
13706--13803
26
3.6
26
75
15
83
40
22
16
20
1.91
17005--17395
124
3.2
123
90
3
592
31
16
20
31
1.94
21142--21270
33
3.9
33
94
0
213
28
21
24
25
1.99
21474--21521
25
1.9
25
100
0
96
58
20
10
10
1.60
21475--21528
25
2.2
25
89
0
81
57
22
11
9
1.61
21467--21521
25
2.2
25
93
0
92
61
20
9
9
1.52

Tables:   1

The End!