Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020558.1 Corchorus olitorius cultivar O-4 contig20591, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4420
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:1921 original size:19 final size:19

Alignment explanation


    Indices: 1897--1935  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1887 AAATTTTCGA

                        *      
       1897 AAAAAATTATGGTATATTT
          1 AAAAAATTATGGCATATTT

                               
       1916 AAAAAATTATGGCATATTT
          1 AAAAAATTATGGCATATTT

             
       1935 A
          1 A

       1936 GATTTTGATG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38


Consensus pattern (19 bp):   
AAAAAATTATGGCATATTT

Found at i:2154 original size:14 final size:15

Alignment explanation


    Indices: 2135--2164  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2125 CAATCAAAGC

                           
       2135 AATAAT-CAAGGAAA
          1 AATAATGCAAGGAAA

                           
       2149 AATAATGCAAGGAAA
          1 AATAATGCAAGGAAA

             
       2164 A
          1 A

       2165 TTAAAGAGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13


Consensus pattern (15 bp):   
AATAATGCAAGGAAA

Done.