Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020561.1 Corchorus olitorius cultivar O-4 contig20594, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26101

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
740--816
40
1.9
40
86
0
109
32
6
15
45
1.72
959--1159
89
2.3
90
93
1
352
32
16
24
26
1.96
2344--2378
16
2.2
16
90
10
54
51
5
0
42
1.25
3455--3499
2
24.0
2
82
13
60
51
0
0
48
1.00
5324--5358
13
2.6
14
90
4
54
17
11
25
45
1.81
6420--6481
31
2.0
31
96
0
115
37
6
4
51
1.49
8002--8042
18
2.2
19
87
12
59
26
17
2
53
1.56
10468--10514
17
2.8
16
84
9
58
23
21
21
34
1.97
10829--10853
13
1.9
13
100
0
50
56
24
0
20
1.43
11593--11618
2
13.0
2
100
0
52
50
0
0
50
1.00
15781--15829
20
2.5
20
93
0
89
14
18
26
40
1.89
23310--23352
21
2.0
21
86
0
59
44
9
11
34
1.73
24867--24916
18
2.8
18
100
0
100
48
16
6
30
1.70
25739--25790
25
2.2
24
86
6
70
5
40
46
7
1.57
25823--25881
6
10.2
6
87
3
59
74
0
25
0
0.82
25826--25881
18
3.2
18
79
2
69
76
0
23
0
0.78

Tables:   1

The End!