Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020562.1 Corchorus olitorius cultivar O-4 contig20595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2463
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33


Found at i:459 original size:30 final size:30

Alignment explanation


    Indices: 425--484  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        415 ACGGCTGCCT

                                          
        425 TCAAAAGAGTTTCATCAACCTCCTAACTCA
          1 TCAAAAGAGTTTCATCAACCTCCTAACTCA

                                          
        455 TCAAAAGAGTTTCATCAACCTCCTAACTCA
          1 TCAAAAGAGTTTCATCAACCTCCTAACTCA

        485 ATAAATCCCC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.37, C:0.30, G:0.07, T:0.27


Consensus pattern (30 bp):   
TCAAAAGAGTTTCATCAACCTCCTAACTCA
Done.