Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020565.1 Corchorus olitorius cultivar O-4 contig20598, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5278

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1370--1434
14
4.8
13
87
12
87
43
7
10
38
1.68
2060--2122
28
2.3
27
83
10
74
77
1
19
1
0.93
2060--2137
4
19.8
4
75
19
67
76
1
19
2
0.96
3246--3658
37
11.2
35
72
13
301
24
15
14
45
1.84
3215--3672
74
6.2
74
89
2
634
24
16
14
44
1.85
3696--3737
18
2.3
18
88
8
59
21
14
9
54
1.68
3768--3939
54
3.2
53
78
10
152
29
18
20
31
1.96
3840--3959
55
2.2
55
77
8
129
29
20
20
30
1.98
3970--4047
33
2.4
33
86
4
104
44
19
5
30
1.72
4187--4211
7
3.6
7
100
0
50
52
16
0
32
1.44
4179--4235
28
2.0
29
86
3
80
47
17
5
29
1.70
4260--4299
7
5.7
7
96
0
71
60
15
10
15
1.60

Tables:   1

The End!