Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020568.1 Corchorus olitorius cultivar O-4 contig20601, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46084

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
394--439
2
23.0
2
86
8
67
50
2
2
45
1.26
15723--15974
131
2.0
127
89
6
386
38
10
1
49
1.46
19219--19470
123
2.0
123
89
6
387
49
1
10
38
1.47
22573--22630
30
1.9
31
96
3
109
50
3
20
25
1.64
22877--22932
28
2.0
28
89
0
85
69
7
16
7
1.33
27419--27530
55
2.0
55
96
0
206
34
22
2
40
1.68
27597--27663
21
3.2
21
68
16
57
26
7
14
50
1.70
27596--27676
42
1.9
42
92
5
137
28
8
16
46
1.76
37116--37146
16
1.9
16
93
0
53
51
6
12
29
1.65
43112--43165
27
2.0
27
100
0
108
29
11
25
33
1.91
44871--44918
6
8.3
6
78
21
50
0
0
16
83
0.65
44881--44914
5
6.8
5
87
12
52
0
0
14
85
0.60
44954--45128
34
4.9
35
82
9
219
39
19
14
26
1.90
44917--45133
39
6.0
34
79
10
218
38
19
15
26
1.91
44917--45133
70
3.0
70
87
6
274
38
19
15
26
1.91

Tables:   1

The End!