Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020570.1 Corchorus olitorius cultivar O-4 contig20603, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94581

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4571--4606
17
2.1
17
100
0
72
41
25
5
27
1.77
15203--15228
6
4.3
6
100
0
52
15
65
0
19
1.27
19277--19312
19
1.9
18
88
5
54
41
2
22
33
1.68
24256--24296
12
3.7
11
81
18
50
24
0
2
73
0.96
24492--24533
15
2.9
15
79
13
52
26
40
33
0
1.56
25047--25086
19
2.0
20
85
4
55
47
15
30
7
1.72
26079--26125
21
2.1
21
84
11
58
19
4
12
63
1.44
27703--27738
19
1.9
18
88
5
54
41
2
22
33
1.68
32899--33052
81
1.9
81
93
0
263
30
20
11
38
1.87
35433--35489
7
7.7
7
75
16
53
75
0
21
3
0.95
35454--35490
14
2.6
14
95
0
65
78
0
21
0
0.75
36646--36691
17
2.6
18
76
16
51
50
2
0
47
1.13
37461--37499
20
2.0
20
89
0
60
58
12
5
23
1.54
41948--42056
51
2.1
50
79
11
114
21
21
11
45
1.83
42594--42652
24
2.6
23
79
10
59
20
6
1
71
1.18
46095--46167
2
38.0
2
81
8
80
45
0
0
54
0.99
46097--46167
21
3.4
22
90
3
94
45
0
0
54
0.99
46117--46167
17
3.0
17
91
0
75
47
0
0
52
1.00
51985--52043
16
3.7
16
80
13
68
33
13
23
28
1.93
52224--52260
11
3.2
12
88
11
51
45
0
5
48
1.25
60299--60327
10
2.7
11
89
10
51
10
34
0
55
1.34
61502--61571
21
3.3
21
72
18
63
40
11
12
35
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61501--61574
22
3.4
22
71
17
64
40
12
12
35
1.80
61502--61593
43
2.1
43
86
7
125
40
11
13
34
1.81
61539--61872
22
14.8
22
73
10
201
36
9
18
35
1.83
61513--61744
44
5.2
46
75
9
178
36
8
17
37
1.81
61773--61843
25
2.8
25
93
0
115
32
9
26
30
1.89
63865--64382
41
12.7
41
77
9
431
37
21
25
16
1.93
67903--67969
28
2.4
28
89
0
98
17
14
28
38
1.90
72504--72540
15
2.6
14
91
4
56
2
0
18
78
0.87
74558--74599
21
2.0
22
85
4
59
21
28
14
35
1.92
76952--77002
17
3.1
16
75
13
50
80
9
1
7
0.98
77595--77747
50
3.1
49
85
5
175
32
16
12
38
1.86
78186--78216
15
2.1
15
93
0
53
70
6
9
12
1.31
79591--79626
19
1.9
18
88
5
54
33
22
2
41
1.68
80213--80346
50
2.7
50
95
0
232
29
27
14
27
1.96
80311--80757
69
6.5
69
92
1
691
25
30
17
26
1.97
80766--80923
51
3.1
51
92
2
248
35
15
24
25
1.94
80779--80951
51
3.4
49
87
4
204
37
13
23
25
1.91
80766--80951
101
1.8
102
82
5
243
36
14
22
26
1.93
84033--84073
2
20.5
2
84
0
55
48
2
2
46
1.28
84755--84833
30
2.6
29
82
6
77
36
17
20
25
1.94
85012--85086
30
2.5
31
82
6
91
28
28
17
26
1.98
88254--88600
79
4.4
79
91
2
509
30
26
20
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89592--89675
44
1.9
44
100
0
168
52
5
27
14
1.64
93275--93528
124
2.0
128
86
7
356
38
11
1
48
1.49

Tables:   1

The End!