Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020574.1 Corchorus olitorius cultivar O-4 contig20607, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36878

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
410--460
2
25.5
2
100
0
102
50
0
49
0
1.00
887--939
3
17.7
3
100
0
106
33
0
0
66
0.92
12239--12296
19
2.9
20
87
5
82
36
12
20
31
1.89
12239--12297
21
3.0
20
87
5
84
35
11
20
32
1.89
12935--13008
35
2.1
35
94
0
130
21
13
20
44
1.85
13035--13082
18
2.5
19
86
10
71
43
0
0
56
0.99
13211--13245
18
1.9
18
94
0
61
28
8
11
51
1.67
14235--14270
17
2.1
17
100
0
72
38
16
13
30
1.88
14424--14628
103
2.0
102
96
0
374
20
34
17
28
1.95
26533--26600
34
2.0
34
100
0
136
41
11
23
23
1.87
30282--30395
56
2.0
56
98
0
219
33
24
1
40
1.66
36742--36824
30
3.0
27
83
10
112
40
4
3
50
1.41

Tables:   1

The End!