Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020575.1 Corchorus olitorius cultivar O-4 contig20608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37186

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179--261
30
3.0
27
84
10
121
42
3
3
50
1.37
9538--9562
10
2.5
10
100
0
50
8
20
28
44
1.79
9832--9869
14
2.9
14
84
11
53
36
0
13
50
1.42
17632--17696
33
2.1
31
88
11
98
35
16
12
35
1.87
25640--25671
15
2.1
16
94
5
57
46
6
21
25
1.74
26717--26759
18
2.4
18
88
0
59
18
11
25
44
1.84
31810--31882
36
2.0
36
97
0
137
26
26
23
24
2.00
32108--32139
2
16.0
2
100
0
64
50
0
0
50
1.00
32832--32955
64
1.9
65
85
4
171
32
17
18
31
1.94
35957--35989
14
2.2
16
89
10
52
54
0
0
45
0.99

Tables:   1

The End!