Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020576.1 Corchorus olitorius cultivar O-4 contig20609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47395

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1210--1256
14
3.4
14
76
5
60
61
0
8
29
1.25
1306--1660
148
2.4
149
91
2
552
51
3
9
35
1.53
1936--2010
28
2.6
29
80
4
89
17
21
17
44
1.87
2213--2288
29
2.7
29
79
2
91
36
15
28
18
1.92
4779--4829
22
2.3
22
83
6
59
23
19
7
49
1.74
10812--10847
16
2.2
16
90
0
54
50
30
11
8
1.67
11468--11707
132
1.8
131
84
7
335
49
2
9
38
1.48
11899--12084
93
2.0
92
95
1
336
42
23
5
28
1.76
12713--12745
15
2.3
15
89
5
50
45
0
3
51
1.16
14046--14092
2
23.0
2
95
4
85
48
0
2
48
1.13
17338--17382
23
2.0
23
90
0
72
26
20
28
24
1.99
26896--26965
31
2.3
31
100
0
140
54
17
5
22
1.64
42159--42186
1
28.0
1
100
0
56
100
0
0
0
0.00
45341--45365
13
1.9
13
100
0
50
16
0
32
52
1.44
47268--47302
2
18.0
2
88
5
54
48
0
2
48
1.16
47365--47395
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!