Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020577.1 Corchorus olitorius cultivar O-4 contig20610, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169259

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5765--5845
40
2.0
40
100
0
162
41
28
9
19
1.83
6086--6138
28
1.9
27
85
11
72
60
11
7
20
1.55
7220--7257
11
3.2
12
78
14
51
73
2
5
18
1.14
7218--7253
13
2.9
12
84
8
54
77
2
2
16
1.00
8971--9134
31
5.4
31
77
1
143
33
25
23
17
1.96
8971--9096
62
2.0
62
85
0
171
34
24
23
17
1.96
16061--16085
8
3.1
8
100
0
50
40
24
0
36
1.55
19040--19093
27
2.0
27
89
7
83
27
18
7
46
1.76
25271--25362
42
2.2
42
88
3
134
38
9
20
31
1.85
26722--26767
10
4.6
10
88
0
65
41
17
6
34
1.75
30158--30184
11
2.5
11
100
0
54
14
0
0
85
0.61
30134--30186
24
2.2
25
86
3
72
18
0
3
77
0.92
36778--36860
22
3.8
21
73
17
64
57
1
2
38
1.19
36780--36828
25
2.0
25
84
8
64
59
0
0
40
0.98
83161--83272
55
2.1
54
81
5
127
39
24
17
18
1.92
84707--84731
12
2.1
12
100
0
50
60
16
0
24
1.36
86328--87240
438
2.1
434
82
5
1093
31
14
12
41
1.84
94507--94750
76
3.2
76
89
1
364
21
38
24
15
1.93
94935--94971
4
9.2
4
100
0
74
75
0
0
24
0.80
94969--94994
2
13.0
2
100
0
52
50
0
0
50
1.00
98287--98368
41
2.0
42
82
2
103
42
12
26
18
1.85
98524--98565
21
2.0
22
90
4
68
40
9
7
42
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100353--100412
31
2.0
29
90
6
93
38
8
11
41
1.72
108562--108591
16
1.9
15
93
6
51
40
13
23
23
1.90
109152--109186
17
2.1
17
100
0
70
40
0
31
28
1.57
116436--116465
13
2.3
13
94
0
51
13
0
13
73
1.10
118965--118999
16
2.2
16
94
0
61
54
0
0
45
0.99
119565--119644
40
2.0
40
92
0
133
36
20
3
40
1.70
120666--120744
31
2.6
31
89
2
115
27
27
20
24
1.99
121559--122008
195
2.3
196
97
0
848
28
29
8
34
1.86
135054--135109
6
9.5
6
92
3
96
17
64
0
17
1.30
136187--136266
30
2.7
30
94
0
142
11
26
22
40
1.87
146715--146788
4
18.5
4
100
0
148
75
0
24
0
0.80
162694--162724
15
2.1
15
93
0
53
48
0
0
51
1.00
162671--162721
19
2.7
18
82
8
66
52
1
0
45
1.12

Tables:   1

The End!