Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020578.1 Corchorus olitorius cultivar O-4 contig20611, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5846
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:3074 original size:15 final size:16

Alignment explanation


    Indices: 3051--3083  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       3041 ATAACTATAA

                *           
       3051 ATCCTCATATC-ATAT
          1 ATCCACATATCGATAT

                            
       3066 ATCCACATATCGATAT
          1 ATCCACATATCGATAT

              
       3082 AT
          1 AT

       3084 AACCTTTACT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15   10  0.62
  16    6  0.38

ACGTcount: A:0.36, C:0.24, G:0.03, T:0.36


Consensus pattern (16 bp):   
ATCCACATATCGATAT

Found at i:4879 original size:2 final size:2

Alignment explanation


    Indices: 4874--4904  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       4864 GAATAATAAC

                                                          
       4874 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       4905 ATTGGACCTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.