Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020582.1 Corchorus olitorius cultivar O-4 contig20615, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8497
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:7631 original size:20 final size:20

Alignment explanation


    Indices: 7606--7645  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       7596 TTAGGTTCAA

                                
       7606 CTCTCACGGAATGTGAGTTT
          1 CTCTCACGGAATGTGAGTTT

                                
       7626 CTCTCACGGAATGTGAGTTT
          1 CTCTCACGGAATGTGAGTTT

       7646 GTTTGTAATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35


Consensus pattern (20 bp):   
CTCTCACGGAATGTGAGTTT
Done.