Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020583.1 Corchorus olitorius cultivar O-4 contig20616, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30986

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--42
20
2.0
20
100
0
80
20
20
25
35
1.96
2249--2278
2
15.0
2
100
0
60
50
0
0
50
1.00
4346--4385
19
2.2
19
86
4
55
27
0
0
72
0.85
7032--7214
93
2.0
94
88
1
278
29
29
22
18
1.97
8594--8661
29
2.3
30
89
5
102
32
4
7
55
1.47
8594--8661
30
2.3
29
87
10
93
32
4
7
55
1.47
8656--8715
29
2.1
30
81
12
81
50
3
10
36
1.53
16716--17116
200
2.0
200
99
0
784
35
9
22
32
1.86
17264--17309
23
2.0
22
83
4
56
80
2
4
13
0.95
17878--18092
31
7.1
31
83
3
188
34
26
23
15
1.94
18019--18097
29
2.7
29
94
2
131
34
26
25
13
1.94
20943--20974
2
16.0
2
100
0
64
50
0
0
50
1.00
29317--29347
15
2.1
15
100
0
62
12
32
12
41
1.81

Tables:   1

The End!