Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020584.1 Corchorus olitorius cultivar O-4 contig20617, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69257

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8746--8790
22
2.0
22
91
0
72
15
13
13
57
1.65
12617--12687
31
2.4
30
82
15
87
0
26
1
71
0.94
12616--12677
27
2.4
25
81
10
72
0
29
1
69
0.98
14397--14442
19
2.4
19
92
7
76
56
0
2
41
1.11
16698--16727
16
1.9
15
93
6
51
46
0
0
53
1.00
18477--18540
31
2.2
28
83
8
74
28
21
14
35
1.92
20671--20838
22
7.5
22
71
9
90
36
13
10
38
1.80
20781--20848
23
3.0
22
82
8
75
29
17
8
44
1.79
20781--20851
22
3.2
21
82
9
79
29
16
8
45
1.77
24922--24950
2
14.5
2
100
0
58
48
0
0
51
1.00
25271--25386
57
2.0
57
98
0
223
45
19
13
20
1.84
33771--33817
24
2.0
23
84
8
60
42
12
4
40
1.63
34035--34175
71
2.0
70
95
1
255
40
8
14
36
1.77
35310--35345
18
2.0
18
100
0
72
44
22
5
27
1.75
35895--36512
308
2.0
308
100
0
1236
23
16
17
42
1.89
38740--38833
45
2.2
44
86
7
131
38
19
6
36
1.77
43836--43888
6
8.7
6
76
19
56
45
0
3
50
1.19
44746--44787
21
2.0
22
90
4
68
42
7
9
40
1.65
48206--48239
2
17.0
2
93
0
59
47
0
0
52
1.00
48206--48247
10
4.2
10
93
0
57
42
0
0
57
0.99
48438--48753
76
4.2
76
87
3
440
17
24
37
21
1.94
48438--48736
151
2.0
151
88
3
449
17
25
35
22
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56073--56106
16
2.1
16
100
0
68
41
5
26
26
1.78
57311--57351
2
20.5
2
94
0
73
46
0
2
51
1.14
63966--64023
29
2.0
28
93
3
98
39
20
10
29
1.86
67563--67605
18
2.4
18
84
0
59
46
0
0
53
1.00
68629--68657
10
3.0
10
95
5
51
31
0
0
68
0.89

Tables:   1

The End!