Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020585.1 Corchorus olitorius cultivar O-4 contig20618, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46962

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
727--765
20
1.9
21
84
5
53
25
10
23
41
1.86
2728--2790
28
2.2
28
100
0
126
33
12
15
38
1.86
18950--18974
3
8.3
3
100
0
50
68
32
0
0
0.90
19658--19717
31
1.9
31
90
6
95
40
41
11
6
1.68
36284--36330
22
2.1
22
84
7
60
29
10
6
53
1.60
38358--38433
22
3.5
22
81
1
82
40
5
13
40
1.66
40305--40342
16
2.4
16
86
4
60
36
0
7
55
1.29
40592--40690
27
3.7
27
81
0
108
35
17
29
18
1.93
40841--40875
14
2.6
13
86
4
52
40
22
20
17
1.92
41904--41940
19
2.0
19
89
5
58
32
2
0
64
1.07
43243--43745
251
2.0
251
97
0
952
35
13
16
33
1.89
43902--44236
171
2.0
171
97
0
634
39
11
10
38
1.76
46575--46605
16
1.9
16
93
0
53
38
9
6
45
1.63

Tables:   1

The End!