Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020588.1 Corchorus olitorius cultivar O-4 contig20621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93392

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9584--9644
24
2.5
24
100
0
122
13
0
24
62
1.31
10207--10412
102
2.0
102
97
0
385
33
7
30
29
1.84
12428--12484
29
2.0
29
85
0
78
29
14
22
33
1.93
13338--13406
35
2.0
35
88
0
102
28
13
13
44
1.80
13592--13623
13
2.5
13
94
0
55
34
12
37
15
1.85
15627--15712
45
1.9
45
92
0
145
10
24
1
63
1.32
15637--15736
45
2.2
45
82
7
114
14
24
2
60
1.45
18335--18383
21
2.4
21
77
16
57
67
6
8
18
1.37
19094--19241
38
3.9
38
85
1
199
22
33
19
24
1.97
19094--19238
77
1.9
75
85
2
200
22
33
20
24
1.97
19309--19518
104
2.0
104
100
0
420
44
20
5
29
1.75
24306--24363
29
2.0
30
86
3
82
29
12
22
36
1.90
24756--24835
40
2.0
40
95
0
142
36
30
12
21
1.90
24899--24924
13
2.0
13
100
0
52
15
0
38
46
1.46
25926--25967
21
2.0
21
100
0
84
9
47
0
42
1.36
25980--26016
16
2.3
16
95
0
65
51
27
0
21
1.48
42427--42539
42
2.8
42
92
6
182
28
22
20
29
1.98
45923--46004
42
2.0
42
92
0
137
47
7
19
25
1.75
51031--51071
21
2.0
21
86
13
59
7
43
4
43
1.53
51322--51362
15
2.7
15
88
7
57
26
36
9
26
1.88
52277--52301
10
2.5
10
100
0
50
48
8
0
44
1.32
54187--54279
45
2.1
45
93
0
159
36
4
22
36
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57068--57115
11
4.7
11
80
12
50
39
10
20
29
1.86
58476--58518
15
2.8
15
85
3
59
9
13
13
62
1.53
58944--59095
27
5.5
28
71
19
115
40
7
10
41
1.69
59030--59080
26
2.0
25
88
7
75
27
9
9
52
1.65
62361--62427
21
3.1
21
78
2
71
19
46
20
13
1.83
64268--64315
11
4.7
11
80
12
50
39
10
20
29
1.86
65676--65718
15
2.8
15
85
3
59
9
13
13
62
1.53
67600--67667
33
2.1
33
88
5
102
42
22
16
19
1.89
78633--78684
20
2.6
20
78
0
59
15
13
23
48
1.80
82836--82894
31
1.9
31
96
0
109
40
6
16
35
1.76

Tables:   1

The End!