Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020589.1 Corchorus olitorius cultivar O-4 contig20622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63110

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12076--12137
31
2.0
31
96
0
115
40
6
17
35
1.76
13345--13374
15
2.0
15
93
0
51
36
0
20
43
1.52
13227--13370
76
1.9
76
89
0
225
38
3
17
40
1.67
14315--14391
39
2.0
39
94
0
136
35
19
10
35
1.86
19038--19106
32
2.2
31
86
2
93
39
14
17
28
1.89
19086--19143
29
2.0
28
80
9
64
36
8
20
34
1.84
21759--21784
2
13.0
2
100
0
52
0
50
0
50
1.00
26721--26745
5
5.0
5
100
0
50
0
20
40
40
1.52
37683--37725
20
2.2
20
86
0
59
13
23
18
44
1.86
46469--46505
18
2.1
18
90
10
58
29
37
5
27
1.79
52094--52196
51
2.0
51
81
3
118
23
24
11
40
1.87
52884--52909
13
2.0
13
100
0
52
15
15
30
38
1.88
57408--57440
1
33.0
1
93
0
57
96
3
0
0
0.20
62340--62366
5
5.4
5
100
0
54
0
22
18
59
1.38

Tables:   1

The End!