Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002059.1 Corchorus olitorius cultivar O-4 contig02059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7136
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:101 original size:15 final size:15

Alignment explanation


    Indices: 81--113  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

         71 GAAGGTTTTC

                           
         81 GTTTTTCCATTTAAG
          1 GTTTTTCCATTTAAG

                           
         96 GTTTTTCCATTTAAG
          1 GTTTTTCCATTTAAG

               
        111 GTT
          1 GTT

        114 AGCATTGTTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.18, C:0.12, G:0.15, T:0.55


Consensus pattern (15 bp):   
GTTTTTCCATTTAAG
Done.