Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020590.1 Corchorus olitorius cultivar O-4 contig20623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60821

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2087--2133
23
2.0
23
100
0
94
27
17
21
34
1.95
2336--2364
13
2.3
13
94
5
51
27
44
0
27
1.54
2392--2473
29
3.0
29
87
10
127
17
31
17
34
1.93
2393--2473
25
3.0
26
91
7
119
16
32
17
34
1.92
8332--8359
14
2.0
14
100
0
56
28
7
7
57
1.52
10826--10917
46
2.0
46
93
4
159
33
8
31
26
1.87
11335--11529
97
2.0
98
93
2
338
32
17
15
34
1.91
19854--19922
36
1.9
36
96
0
129
60
7
8
23
1.51
19943--20035
48
1.9
48
97
0
177
51
9
12
25
1.70
21880--21932
25
2.1
25
100
0
106
49
7
13
30
1.69
27322--28106
389
2.0
392
97
1
1506
24
29
17
28
1.97
31315--31366
23
2.3
23
100
0
104
11
46
3
38
1.59
31669--31771
52
2.0
51
80
12
113
23
21
13
41
1.88
32352--32406
13
4.2
13
77
9
58
21
21
29
27
1.99
32358--32413
26
2.2
26
86
0
76
17
23
32
26
1.97
32358--32413
13
4.3
13
79
4
60
17
23
32
26
1.97
32479--32558
31
2.6
30
96
4
133
11
15
32
41
1.82
32823--32903
39
2.1
39
83
0
99
39
16
7
37
1.76
41736--41793
28
2.1
28
100
0
116
51
6
6
34
1.55
41736--41783
16
3.2
16
66
22
50
52
4
8
35
1.51
45056--45105
25
2.0
26
88
4
75
50
0
12
38
1.40
47157--47185
14
2.1
14
100
0
58
55
6
6
31
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54298--54335
13
2.8
13
88
7
51
39
2
0
57
1.12

Tables:   1

The End!