Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020593.1 Corchorus olitorius cultivar O-4 contig20626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79551

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5318--5369
24
2.2
24
92
0
86
23
21
23
32
1.98
18437--18469
16
2.1
16
100
0
66
36
33
24
6
1.80
27346--27383
19
2.0
19
100
0
76
42
5
15
36
1.70
27352--27394
19
2.3
19
83
0
50
48
4
13
32
1.63
31074--31104
1
31.0
1
93
0
53
96
0
3
0
0.21
31511--31552
1
42.0
1
100
0
84
0
0
0
100
0.00
38554--38582
15
2.0
15
93
6
51
44
0
0
55
0.99
38663--38704
14
3.0
13
86
13
57
7
2
4
85
0.80
38664--38704
15
2.8
15
92
3
66
7
2
4
85
0.81
48199--48231
15
2.2
16
89
10
52
0
30
15
54
1.41
63231--63266
18
2.0
18
100
0
72
33
33
27
5
1.80
65956--66017
31
2.0
31
87
0
88
40
14
24
20
1.90
66158--66207
16
2.9
17
82
5
57
48
4
0
48
1.20
78852--78911
15
4.0
15
73
0
57
31
20
35
13
1.91

Tables:   1

The End!