Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020598.1 Corchorus olitorius cultivar O-4 contig20631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3696
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.34


Found at i:2954 original size:14 final size:14

Alignment explanation


    Indices: 2935--2964  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       2925 GAGCAATCGC

                          
       2935 TAATTGATTAATAT
          1 TAATTGATTAATAT

                          
       2949 TAATTGATTAATAT
          1 TAATTGATTAATAT

              
       2963 TA
          1 TA

       2965 GTCATACTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50


Consensus pattern (14 bp):   
TAATTGATTAATAT
Done.