Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000206.1 Corchorus olitorius cultivar O-4 contig00206, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1272
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28


Found at i:550 original size:21 final size:21

Alignment explanation


    Indices: 526--567  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        516 ATATCTTGCT

                                 
        526 ATAATCAACCAAGGTCACAAC
          1 ATAATCAACCAAGGTCACAAC

                                 
        547 ATAATCAACCAAGGTCACAAC
          1 ATAATCAACCAAGGTCACAAC

        568 TTCAACATAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.48, C:0.29, G:0.10, T:0.14


Consensus pattern (21 bp):   
ATAATCAACCAAGGTCACAAC
Done.