Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020601.1 Corchorus olitorius cultivar O-4 contig20634, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36972

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1614--1647
16
2.1
16
89
10
52
47
0
0
52
1.00
4325--4502
85
2.1
82
84
7
225
39
7
2
51
1.42
4646--4771
65
2.0
62
89
7
191
35
5
4
53
1.45
12171--12221
19
2.7
19
77
14
61
47
0
1
50
1.12
13584--13685
51
2.0
50
80
12
111
23
21
13
41
1.89
18397--18425
2
14.5
2
100
0
58
48
0
0
51
1.00
27731--27775
1
45.0
1
81
0
54
0
0
8
91
0.43
27730--27781
11
4.5
11
83
11
68
1
0
11
86
0.65
27730--27781
8
6.6
8
88
6
72
1
0
11
86
0.65
27733--27781
9
5.4
9
83
9
64
2
0
10
87
0.62
28307--28352
2
25.0
2
79
16
55
54
2
0
43
1.12
28307--28352
9
5.2
9
92
2
76
54
2
0
43
1.12
28517--28642
23
5.2
23
72
23
107
28
0
12
57
1.41
28515--28660
49
3.0
49
95
0
256
29
2
12
56
1.47
29708--29773
29
2.3
28
80
12
71
21
22
15
40
1.90
29831--29914
33
2.6
31
77
15
98
11
19
32
36
1.88

Tables:   1

The End!