genome.fa.s20602.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020602.1 Corchorus olitorius cultivar O-4 contig20635, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102365

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2426--2481	21	2.7	20	78	8	58	30	10	14	44	1.79
4022--4061	18	2.1	18	86	9	53	67	5	20	7	1.34
4661--4696	19	1.9	18	88	5	54	30	22	5	41	1.76
8122--8167	24	1.9	24	82	8	58	39	10	2	47	1.51
9225--9260	18	1.9	18	88	5	54	63	8	22	5	1.43
11324--11374	18	2.8	17	85	8	57	49	1	1	47	1.24
21227--21283	13	4.8	11	73	14	51	50	10	3	35	1.54
28428--28476	25	2.0	25	91	0	80	48	18	10	22	1.77
28527--28567	20	2.2	19	86	8	57	24	0	7	68	1.15
32246--32321	28	2.6	30	77	10	77	39	14	26	19	1.90
48818--48890	33	2.2	33	100	0	146	57	24	0	17	1.40
55820--55869	21	2.4	21	96	0	91	26	40	4	30	1.74
57156--57212	26	2.2	26	84	9	71	54	1	0	43	1.10
61246--61295	22	2.3	22	85	0	73	42	8	14	36	1.74
63829--63873	19	2.4	19	80	0	54	28	2	8	60	1.39
67057--67145	45	2.0	45	84	0	115	17	39	21	21	1.93
67703--67779	16	4.6	16	77	15	57	42	0	29	27	1.56
67731--67770	16	2.3	19	75	25	59	45	0	27	27	1.54
70648--70751	52	2.0	51	96	1	190	25	20	32	21	1.97
75032--75076	12	3.8	12	77	11	56	4	28	42	24	1.74
75030--75076	24	2.0	24	95	0	85	4	27	44	23	1.72
75096--75120	6	4.2	6	100	0	50	0	36	16	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75429--75507	33	2.4	33	84	0	104	26	50	8	13	1.71
83032--83063	16	2.0	16	100	0	64	43	37	0	18	1.51
86202--86269	33	2.1	33	97	0	127	45	7	17	29	1.75
88473--88538	27	2.6	25	85	7	80	40	19	22	16	1.91
91718--91936	106	2.1	106	99	0	429	47	1	16	33	1.57
91962--91999	19	2.0	19	100	0	76	47	21	10	21	1.80
92829--92867	17	2.4	16	83	8	51	20	12	17	48	1.80
95232--95262	2	15.5	2	93	0	53	51	0	48	0	1.00
96128--96181	26	2.1	26	96	0	99	27	22	14	35	1.93
99966--100132	42	4.1	42	76	7	173	42	17	13	26	1.86
99971--100122	80	1.9	80	88	0	232	42	17	14	25	1.88
100088--100234	59	2.5	59	86	0	204	44	18	12	24	1.84
100251--100363	59	1.9	59	83	0	145	40	21	15	23	1.90
100150--100435	101	2.8	104	82	5	375	43	19	12	24	1.86
100389--100425	17	2.2	17	90	0	56	43	18	16	21	1.88
100150--100467	101	3.1	100	80	5	368	43	19	12	24	1.85
100258--101245	160	6.2	160	72	9	548	42	18	13	25	1.87
100352--100518	59	2.8	59	87	3	246	43	18	14	23	1.87
100411--100728	101	3.1	101	82	0	386	43	18	13	24	1.86
100617--100753	59	2.3	59	91	0	220	48	17	10	24	1.78
100836--100934	42	2.4	42	87	0	135	41	20	14	24	1.89
100667--100993	101	3.2	100	83	3	384	42	17	13	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100049--101246	526	2.3	527	92	0	2024	43	18	13	25	1.86
100878--101025	59	2.5	59	93	0	251	43	18	13	23	1.86
100937--101245	101	3.0	101	88	0	456	43	18	13	25	1.86
101038--101154	60	2.0	59	89	1	180	41	17	16	24	1.89
101093--101196	42	2.5	42	85	0	136	45	19	11	24	1.83
102021--102057	17	2.2	17	90	0	56	43	18	16	21	1.88
101988--102125	59	2.3	59	96	0	249	44	19	13	22	1.85

Tables:   1

The End!