Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020606.1 Corchorus olitorius cultivar O-4 contig20639, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31278

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
435--477
16
2.7
16
81
0
50
9
13
23
53
1.69
1513--1595
42
2.0
42
95
0
148
39
19
6
34
1.76
6519--6569
22
2.3
22
83
6
59
41
9
9
39
1.71
9457--9546
18
5.0
18
84
4
110
33
11
27
27
1.91
12781--12833
18
3.0
17
83
8
70
33
11
26
28
1.91
12783--12851
18
3.8
18
81
14
63
36
10
23
30
1.88
17211--17284
35
2.1
35
92
0
121
16
9
27
47
1.77
19827--19897
34
2.1
34
100
0
142
33
15
30
19
1.93
25725--25828
35
3.1
35
86
6
126
19
11
26
42
1.85
25787--25895
53
2.1
53
98
0
209
25
14
23
35
1.93
30297--30338
15
2.7
15
96
3
75
66
14
7
11
1.43

Tables:   1

The End!