Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020607.1 Corchorus olitorius cultivar O-4 contig20640, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40238

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
374--415
15
2.7
15
96
3
75
66
14
7
11
1.43
7374--7404
16
1.9
16
93
0
53
38
3
9
48
1.52
7639--7697
25
2.3
26
94
5
111
50
15
8
25
1.71
7784--7903
29
4.1
29
80
3
143
45
21
15
16
1.85
10184--10259
29
2.7
27
79
4
89
22
18
22
36
1.95
18006--18063
19
3.2
19
61
14
50
51
13
12
22
1.74
19927--19980
22
2.5
22
90
0
90
24
31
11
33
1.90
29867--30726
35
24.0
35
84
5
956
42
18
11
26
1.85
29867--30711
173
4.7
173
85
6
1019
42
18
11
26
1.85
30692--31028
161
2.1
163
84
4
441
30
23
18
27
1.98
30691--31201
54
9.5
54
79
6
366
32
22
17
27
1.96
31016--31213
106
1.9
107
88
4
301
37
22
13
26
1.92
31137--31327
92
2.1
93
82
4
235
35
20
18
25
1.96
32417--32488
37
1.9
38
82
2
92
31
13
15
38
1.87
35736--35765
14
2.1
15
93
6
53
70
0
10
20
1.16
35763--35823
24
2.5
24
86
5
88
55
1
19
22
1.52
35839--35988
4
38.2
4
64
16
55
66
0
8
24
1.23
35805--36039
43
5.3
43
80
11
147
65
0
8
24
1.27
35836--36047
43
4.8
43
84
8
241
66
0
8
24
1.22
35836--36049
39
5.1
39
73
21
116
66
0
8
24
1.22
36011--36062
18
3.0
18
75
18
56
63
0
9
26
1.25
36416--36466
25
1.9
27
84
11
70
54
7
5
31
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38757--38846
34
2.6
34
80
0
99
23
10
21
45
1.81
38791--38958
84
2.0
85
86
1
239
25
12
14
47
1.80
39069--39234
65
2.5
66
85
0
208
30
15
14
39
1.88
39195--39475
118
2.4
118
83
1
339
24
13
19
42
1.87

Tables:   1

The End!